Publications

You can also find my articles on my Google Scholar profile.

Journal Articles

PolyA-GLM: A comprehensive framework for De novo polyadenylation site prediction using genome language models

Published in Computational and Structural Biotechnology Journal (CSBJ), Elsevier, 2025

A comprehensive framework using genome language models for de novo polyadenylation site prediction, including dataset construction with hard negatives and genome-wide discovery experiments.

Recommended citation: Saha, S. et al. (2025). "PolyA-GLM: A comprehensive framework for De novo polyadenylation site prediction using genome language models." Computational and Structural Biotechnology Journal. Elsevier, Q1, Impact Factor 5.2.

Computational Methods for Alternative Polyadenylation and Splicing in Post-Transcriptional Gene Regulation

Published in Experimental & Molecular Medicine, Nature Publishing Group, 2025

A comprehensive survey and comparison of 40+ transcriptome-wide computational tools for alternative polyadenylation and splicing, covering long-read sequencing and ML-based isoform detection.

Recommended citation: Second Author. (2025). "Computational Methods for Alternative Polyadenylation and Splicing in Post-Transcriptional Gene Regulation." Experimental & Molecular Medicine. Nature Publishing Group, Q1, IF 12.8.

Conference Papers

BnPC: A Gold Standard Corpus for Paraphrase Detection in Bangla

Published in BUCC Workshop @ LREC-COLING 2024, 2024

A gold standard corpus for paraphrase detection in Bangla, featuring automated news headline collection, a carefully designed annotation schema, and benchmarking with language models and GPT.

Recommended citation: Saha, S. et al. (2024). "BnPC: A Gold Standard Corpus for Paraphrase Detection in Bangla." BUCC Workshop @ LREC-COLING 2024.

Data, Annotation, and Meaning-Making: Faith-Based Communal Violence

Published in ACM FAccT 2024, 2024

A qualitative analysis of annotation practices in sensitive domains, introducing the FRS annotation method that addresses colonial and secular bias in data collection.

Recommended citation: Co-author. (2024). "Data, Annotation, and Meaning-Making: Faith-Based Communal Violence." ACM FAccT 2024.

BLP Shared Task 1: Violence-Inciting Text Detection

Published in BLP Workshop @ EMNLP 2023, 2023

The first shared task on violence-inciting text detection: task design, evaluation metrics, baselines, and error analysis of 27 participating teams and 16 accepted papers.

Recommended citation: Saha, S. et al. (2023). "BLP Shared Task 1: Violence-Inciting Text Detection." BLP Workshop @ EMNLP 2023.

Vio-Lens: Annotated Social Network Posts Leading to Communal Violence

Published in BLP Workshop @ EMNLP 2023, 2023

An adaptive framework and annotated dataset for detecting social network posts that lead to communal violence, leveraging semi-supervised topic modeling with human-in-the-loop validation.

Recommended citation: Saha, S. et al. (2023). "Vio-Lens: Annotated Social Network Posts Leading to Communal Violence." BLP Workshop @ EMNLP 2023.

garNER at SemEval-2023 Task 2: Knowledge Augmentation for Multilingual NER

Published in SemEval @ ACL 2023, 2023

Knowledge base augmentation with pre-trained language models for multilingual Named Entity Recognition, achieving Top 10 rankings in 10 tracks at SemEval 2023 Task 2.

Recommended citation: Equal Contribution. (2023). "garNER at SemEval-2023 Task 2: Knowledge Augmentation for Multilingual NER." SemEval @ ACL 2023.

Sourav Saha